Research workbench
Structure of the SH3 domain of MLK3 bound to peptide generated from phage display
Analyse Structure of the SH3 domain of MLK3 bound to peptide generated from phage… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5K26
- Type
- protein
- Length
- 152 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mitogen-activated protein kinase kinase kinase 11,CHIMERA protein of MLK3-SH3 and mip
- EC
- 2.7.11.25
- UniProt
- Q16584
- Pockets
- 1 · best druggability 0.65
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mitogen-activated protein kinase kinase kinase 11,CHIMERA protein of MLK3-SH3 and mip (EC 2.7.11.25) | protein | 77 | 8% helix, 43% strand | Q16584 |
| B | Mitogen-activated protein kinase kinase kinase 11,CHIMERA protein of MLK3-SH3 and mip (EC 2.7.11.25) | protein | 75 | 8% helix, 45% strand | Q16584 |
Ligands and binding sites
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 488 | 0.65 | 0.77 | 43 | empty |
Interfaces
1 interface between chains.
- A–B · 656 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 5K26 · Structure of the SH3 domain of MLK3 bound to peptide generated from phage display · the same entry in another collection · chain A against A, TM-score 1.00
- Q16584 · AlphaFold monomer V2.0 prediction for mitogen-activated protein kinase kinase kinase 11… · a predicted model of the same protein · chain A against A, TM-score 0.78
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q16584
- Elsewhere: RCSB PDB 5K26 · PDBe 5K26 · UniProt Q16584
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