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X-ray structure of the adduct formed in the reaction between thaumatin and a gold carbene compound
Analyse X-ray structure of the adduct formed in the reaction between thaumatin and a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5JVX
- Type
- protein
- Length
- 207 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thaumatin-1
- UniProt
- P02883
- Ligands
- 6O0, CL
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thaumatin-1 | protein | 207 | 12% helix, 37% strand | P02883 |
Ligands and binding sites
- 6O0 · (1-butyl-3-methyl-1,3-dihydro-2H-imidazol-2-ylidene)(chloro)gold · ligand · 6 copies · chains A
- CL · Chloride ion · ion · chains A
- TLA · L(+)-tartaric acid · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 8 disulfide (disulfide).
Compared structures
- 5JVX · X-ray structure of the adduct formed in the reaction between thaumatin and a gold carbene… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02883
- Elsewhere: RCSB PDB 5JVX · PDBe 5JVX · UniProt P02883
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