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Structural model of a protein alpha subunit in complex with GDP obtained with saxs and NMR residual couplings

Analyse Structural model of a protein alpha subunit in complex with GDP obtained with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5JS8
Type: protein
Length: 323 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Guanine nucleotide-binding protein G(I) subunit alpha-1
UniProt: P63096
Pockets: 2 · best druggability 0.61

Structure

solution nmr · 1 distinct chain · 52% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Guanine nucleotide-binding protein G(I) subunit alpha-1	protein	323	52% helix, 11% strand	P63096

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	482	0.61	0.75	49	empty
2	65	0.34	0.77	15	empty

Compared structures

5JS8 · Structural Model of a Protein alpha subunit in complex with GDP obtained with SAXS and… · the same entry in another collection · chain A against A, TM-score 1.00
P63096 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I) subunit… · a predicted model of the same protein · chain A against A, TM-score 0.64

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P63096
Elsewhere: RCSB PDB 5JS8 · PDBe 5JS8 · UniProt P63096

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