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Crystal structure of the light-driven sodium pump KR2 bound with iodide ions

Analyse Crystal structure of the light-driven sodium pump KR2 bound with iodide ions in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5JRF
Type: protein
Length: 268 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sodium pumping rhodopsin
UniProt: N0DKS8
Ligands: LFA, IOD

Structure

x-ray diffraction · 1 distinct chain · 76% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sodium pumping rhodopsin	protein	268	76% helix, 3% strand	N0DKS8

Ligands and binding sites

LFA · Eicosane · ligand · 8 copies · chains A
IOD · Iodide ion · ion · 20 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 modified (nonstandard).

Compared structures

5JRF · Crystal structure of the light-driven sodium pump KR2 bound with iodide ions · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt N0DKS8
Elsewhere: RCSB PDB 5JRF · PDBe 5JRF · UniProt N0DKS8

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