Research workbench
Xfel structure of influenza a M2 wild type tm domain at low pH in the lipidic cubic phase at room temperature
Analyse Xfel structure of influenza a M2 wild type tm domain at low pH in the lipidic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5JOO
- Type
- protein
- Length
- 25 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Matrix protein 2
- UniProt
- Q0HD59
- Ligands
- ACE, CA, NH2, CL
Structure
x-ray diffraction · 1 distinct chain · 84% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Matrix protein 2 | protein | 25 | 84% helix, 0% strand | Q0HD59 |
Ligands and binding sites
- ACE · Acetyl group · ligand · chains A
- CA · Calcium ion · metal · 2 copies · chains A
- NH2 · Amino group · ion · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 5JOO · XFEL structure of influenza A M2 wild type TM domain at low pH in the lipidic cubic phase… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0HD59
- Elsewhere: RCSB PDB 5JOO · PDBe 5JOO · UniProt Q0HD59
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