Research workbench
Human carbonic anhydrase II (F131Y/L198A) complexed with 1,3-thiazole- 2-sulfonamide
Analyse Human carbonic anhydrase II (F131Y/L198A) complexed with 1,3-thiazole… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5JGT
- Type
- protein
- Length
- 259 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Carbonic anhydrase 2
- EC
- 4.2.1.1
- UniProt
- P00918
- Ligands
- EVI, ZN
- Pockets
- 3 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 15% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Carbonic anhydrase 2 (EC 4.2.1.1) | protein | 259 | 15% helix, 30% strand | P00918 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 198 | 0.59 | 0.81 | 29 | EVI |
| 2 | 52 | 0.27 | 0.74 | 13 | empty |
| 3 | 50 | 0.25 | 0.73 | 15 | empty |
Compared structures
- 5JGT · Human carbonic anhydrase II (F131Y/L198A) complexed with 1,3-thiazole-2-sulfonamide · the same entry in another collection · chain B against B, TM-score 1.00
- P00918 · AlphaFold monomer V2.0 prediction for carbonic anhydrase 2 (P00918) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00918
- Elsewhere: RCSB PDB 5JGT · PDBe 5JGT · UniProt P00918
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