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Ambient temperature transition state structure of arginine kinase - crystal 8/FORM I
Analyse Ambient temperature transition state structure of arginine kinase - crystal… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5J99
- Type
- protein
- Length
- 356 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Arginine kinase
- EC
- 2.7.3.3
- UniProt
- P51541
- Ligands
- ADP, ARG, MG, NO3
- Pockets
- 1 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Arginine kinase (EC 2.7.3.3) | protein | 356 | 40% helix, 17% strand | P51541 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains A
- ARG · Arginine · ligand · chains A
- MG · Magnesium ion · metal · chains A
- NO3 · Nitrate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 576 | 0.77 | 0.84 | 63 | ADP, ARG, NO3, MG |
Compared structures
- 5J99 · Ambient temperature transition state structure of arginine kinase - crystal 8/Form I · the same entry in another collection · chain A against A, TM-score 1.00
- P51541 · AlphaFold monomer V2.0 prediction for arginine kinase (P51541) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P51541
- Elsewhere: RCSB PDB 5J99 · PDBe 5J99 · UniProt P51541
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