Research workbench

Structure of apo-dehydroascorbate reductase from pennisetum glaucum phased by iodide-sad method

Analyse Structure of apo-dehydroascorbate reductase from pennisetum glaucum phased by… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5IQY
Type: protein
Length: 211 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dehydroascorbate reductase
EC: 1.8.5.1
UniProt: U5XYA0
Ligands: IOD
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Dehydroascorbate reductase (EC 1.8.5.1)	protein	211	53% helix, 10% strand	U5XYA0

Ligands and binding sites

IOD · Iodide ion · ion · 26 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	99	0.39	0.76	22	IOD

Compared structures

5IQY · Structure of apo-Dehydroascorbate Reductase from Pennisetum Glaucum phased by Iodide-SAD… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt U5XYA0
Elsewhere: RCSB PDB 5IQY · PDBe 5IQY · UniProt U5XYA0

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.