Research workbench
Fragment of NITRATE/NITRITE sensor histidine kinase narq (wt) in symmetric holo state
Analyse Fragment of NITRATE/NITRITE sensor histidine kinase narq (wt) in symmetric holo… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5IJI
- Type
- protein
- Length
- 227 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NITRATE/NITRITE sensor histidine kinase narq
- EC
- 2.7.13.3
- UniProt
- P27896
- Ligands
- LFA, NO3
- Pockets
- 2 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 81% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NITRATE/NITRITE sensor histidine kinase narq (EC 2.7.13.3) | protein | 227 | 81% helix, 0% strand | P27896 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 77 | 0.48 | 0.83 | 18 | empty |
| 2 | 61 | 0.35 | 0.77 | 19 | empty |
Compared structures
- 5IJI · Fragment of nitrate/nitrite sensor histidine kinase NarQ (WT) in symmetric holo state · the same entry in another collection · chain A against A, TM-score 1.00
- P27896 · AlphaFold monomer V2.0 prediction for NITRATE/NITRITE sensor protein narq (P27896) · a predicted model of the same protein · chain A against A, TM-score 0.88
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P27896
- Elsewhere: RCSB PDB 5IJI · PDBe 5IJI · UniProt P27896
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