MolNFT v1 · #259515 · protein
AlphaFold monomer V2.0 prediction for NITRATE/NITRITE sensor protein narq (P27896)
P27896: “AlphaFold monomer V2.0 prediction for NITRATE/NITRITE sensor protein narq (P27896)”. 6 pockets (best druggability 0.58). MolNFT v1 #259515 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P27896
- Type
- protein
- Length
- 566 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7A34cB80c9Fe8231CeD9c404461806fEE784901b
- Molecule
- NITRATE/NITRITE sensor protein narq
- UniProt
- P27896
- Pockets
- 6 · best druggability 0.58
Structure
1 distinct chain · 67% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NITRATE/NITRITE sensor protein narq | protein | 566 | 67% helix, 11% strand | P27896 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 275 | 0.58 | 0.78 | 41 | empty |
| 2 | 131 | 0.44 | 0.77 | 17 | empty |
| 3 | 74 | 0.43 | 0.80 | 18 | empty |
| 4 | 76 | 0.41 | 0.79 | 12 | empty |
| 5 | 56 | 0.40 | 0.81 | 13 | empty |
Compared structures
- 5JEQ · Fragment of nitrate/nitrite sensor histidine kinase NarQ (R50K) in symmetric apo state · an experimental structure of the same protein · chain A against A, TM-score 0.39
- 5JEQ · Fragment of NITRATE/NITRITE sensor histidine kinase narq (R50K) in symmetric apo state · an experimental structure of the same protein · chain A against A, TM-score 0.39
- 6YUE · Fragment of NITRATE/NITRITE sensor histidine kinase narq (R50S variant) · an experimental structure of the same protein · chain A against A, TM-score 0.37
- 5IJI · Fragment of nitrate/nitrite sensor histidine kinase NarQ (WT) in symmetric holo state · an experimental structure of the same protein · chain A against A, TM-score 0.37
- 5IJI · Fragment of NITRATE/NITRITE sensor histidine kinase narq (wt) in symmetric holo state · an experimental structure of the same protein · chain A against A, TM-score 0.37
- 5JGP · Crystal structure of the nitrate/nitrite sensor NarQ fragment bound with iodide ions · an experimental structure of the same protein · chain A against A, TM-score 0.37
- 5JGP · Crystal structure of the NITRATE/NITRITE sensor narq fragment bound with iodide ions · an experimental structure of the same protein · chain A against A, TM-score 0.37
- 5JEF · Fragment of NITRATE/NITRITE sensor histidine kinase narq (wt) in asymmetric holo state · an experimental structure of the same protein · chain A against B, TM-score 0.36
- 6XYN · Crystal structure of a proteolytic fragment of narq comprising sensor and tm domains · an experimental structure of the same protein · chain A against A, TM-score 0.27
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P27896
- Elsewhere: UniProt P27896 · AlphaFold DB P27896
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