Research workbench
Quantitative interaction mapping reveals an extended ubiquitin regulatory domain in aspl that disrupts functional P97 hexamers and induces cell death
Analyse Quantitative interaction mapping reveals an extended ubiquitin regulatory… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5IFW
- Type
- protein
- Length
- 885 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tether containing ubx domain for GLUT4; Transitional endoplasmic reticulum ATPase
- EC
- 3.6.4.6
- UniProt
- Q9BZE9, P55072
- Ligands
- ADP
- Pockets
- 14 · best druggability 0.72
Structure
x-ray diffraction · 2 distinct chains · 40% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tether containing ubx domain for GLUT4 | protein | 183 | 37% helix, 18% strand | Q9BZE9 |
| B | Transitional endoplasmic reticulum ATPase (EC 3.6.4.6) | protein | 702 | 41% helix, 19% strand | P55072 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
14 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.72 | 0.99 | 18 | empty |
| 2 | 453 | 0.71 | 0.81 | 49 | empty |
| 3 | 506 | 0.66 | 0.78 | 52 | empty |
| 4 | 300 | 0.57 | 0.76 | 52 | ADP |
| 5 | 66 | 0.56 | 0.88 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 2592 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 5IFW · Quantitative interaction mapping reveals an extended ubiquitin regulatory domain in ASPL… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9BZE9 · AlphaFold monomer V2.0 prediction for tether containing ubx domain for GLUT4 (Q9BZE9) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9BZE9
- Every structure of UniProt P55072
- Elsewhere: RCSB PDB 5IFW · PDBe 5IFW · UniProt Q9BZE9 · UniProt P55072
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.