Research workbench
Crystal structure of an ABC solute binding protein from rhizobium etli cfn 42 (RHE_PF00037,TARGET efi-511357) in complex with alpha-D-apiose
Analyse Crystal structure of an ABC solute binding protein from rhizobium etli cfn 42… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5IBQ
- Type
- protein
- Length
- 287 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable ribose ABC transporter, substrate-binding protein
- UniProt
- Q2JZQ5
- Ligands
- XXM, CA
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable ribose ABC transporter, substrate-binding protein | protein | 287 | 43% helix, 22% strand | Q2JZQ5 |
Ligands and binding sites
- XXM · 3-C-(hydroxylmethyl)-alpha-D-erythrofuranose · ligand · chains A
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5IBQ · Crystal structure of an ABC solute binding protein from Rhizobium etli CFN 42… · the same entry in another collection · chain A against A, TM-score 1.00
- Q2JZQ5 · AlphaFold monomer V2.0 prediction for D-apiose import binding protein (Q2JZQ5) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2JZQ5
- Elsewhere: RCSB PDB 5IBQ · PDBe 5IBQ · UniProt Q2JZQ5
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