Research workbench
Crystal structure of ABC transporter solute binding protein ARAD_9887 from agrobacterium radiobacter K84, target efi-510945 in complex with ribitol
Analyse Crystal structure of ABC transporter solute binding protein ARAD_9887 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5IAI
- Type
- protein
- Length
- 399 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sugar ABC transporter
- UniProt
- B9JM84
- Ligands
- RB0
- Pockets
- 2 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sugar ABC transporter | protein | 399 | 52% helix, 17% strand | B9JM84 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 177 | 0.57 | 0.81 | 36 | RB0 |
| 2 | 76 | 0.33 | 0.75 | 18 | empty |
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 5IAI · Crystal structure of ABC transporter Solute Binding Protein Arad_9887 from Agrobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B9JM84
- Elsewhere: RCSB PDB 5IAI · PDBe 5IAI · UniProt B9JM84
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