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Ligand · RB0

RB0 · D-ribitol

RB0, D-ribitol (C5 H12 O5, 152.2 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
RB0
Formula
C5 H12 O5
Class
ligand
Structures
5
PDB entries
4

Binding sites

RB0 in 5 structures; the first of them:

  • 5IAI · Crystal structure of ABC transporter Solute Binding Protein Arad_9887 from Agrobacterium… · RB0 A501 · binds GLN45, ASP47, TYR75, ASP99, ILE100, TYR154, GLN208, TRP259 and 5 more
  • 7CYY · Crystal structure of Arabinose isomerase from hybrid AI8 with Adonitol · RB0 B501 · binds GLN17, LEU19, TYR20, PHE84, ASN123, GLN126, HIS129, MET186 and 9 more
  • 6KAJ · Crystal structure of fkrp in complex with ba ion · RB0 A505 · binds GLU343, GLY344, ASP364, TRP418, HIS435, GLN437, ASP438
  • 6KAM · Crystal structure of fkrp in complex with ba ion, cdp-ribtol, and sugar acceptor · RB0 A505 · binds GLU343, GLY344, ASP364, TRP418, HIS435, GLN437, ASP438
  • 7CYY · Crystal structure of arabinose isomerase from hybrid AI8 with adonitol · RB0 B501 · binds GLN17, LEU19, TYR20, PHE84, GLN126, HIS129, GLU307, GLU332 and 6 more

Residues it binds most

HIS 20, GLU 20, GLN 16, PHE 16, TYR 13, MET 11, ASP 9, ILE 11, LEU 11, TRP 9 (residue and the binding sites it lines).

Found with

  • CDP · Cytidine-5'-diphosphate
  • BA · Barium ion
  • MN · Manganese (II) ion
  • ZN · Zinc ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • MPD · (4S)-2-methyl-2,4-pentanediol
  • MAN · alpha-D-mannopyranose
  • NGA · 2-acetamido-2-deoxy-beta-D-galactopyranose
  • PO4 · Phosphate ion
  • GOL · Glycerol

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