Research workbench
Yeast V-ATPase average of densities, a subunit segment
Analyse Yeast V-ATPase average of densities, a subunit segment in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5I1M
- Type
- protein
- Length
- 458 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- V-type proton ATPase subunit a, vacuolar isoform
- UniProt
- P32563
- Pockets
- 4 · best druggability 0.50
Structure
electron microscopy · 1 distinct chain · 58% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| V | V-type proton ATPase subunit a, vacuolar isoform | protein | 458 | 58% helix, 1% strand | P32563 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 247 | 0.50 | 0.76 | 48 | empty |
| 2 | 135 | 0.36 | 0.72 | 34 | empty |
| 3 | 136 | 0.35 | 0.72 | 33 | empty |
| 4 | 55 | 0.23 | 0.72 | 19 | empty |
Compared structures
- 5I1M · Yeast V-ATPase average of densities, a subunit segment · the same entry in another collection · chain V against V, TM-score 1.00
- P32563 · AlphaFold monomer V2.0 prediction for V-type proton ATPase subunit a, vacuolar isoform… · a predicted model of the same protein · chain V against A, TM-score 0.70
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32563
- Elsewhere: RCSB PDB 5I1M · PDBe 5I1M · UniProt P32563
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