Research workbench
Crystal structure of smakap akb domain bound ria DIMERIZATION/DOCKING (D/D) complex at 2.0 a resolution
Analyse Crystal structure of smakap akb domain bound ria DIMERIZATION/DOCKING (D/D)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5HVZ
- Type
- protein
- Length
- 120 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Camp-dependent protein kinase type I-alpha regulatory subunit; Small membrane a-kinase…
- UniProt
- P00514, Q9BSF0
Structure
x-ray diffraction · 3 distinct chains · 81% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Camp-dependent protein kinase type I-alpha regulatory subunit | protein | 50 | 84% helix, 0% strand | P00514 |
| B | Camp-dependent protein kinase type I-alpha regulatory subunit | protein | 47 | 79% helix, 0% strand | P00514 |
| C | Small membrane a-kinase anchor protein | protein | 23 | 78% helix, 0% strand | Q9BSF0 |
Interfaces
3 interfaces between chains.
- A–B · 1213 Ų buried · 6 hydrogen bonds · protein-protein
- A–C · 542 Ų buried · 0 hydrogen bonds · protein-protein
- B–C · 523 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5HVZ · Crystal structure of smAKAP AKB domain bound RIa dimerization/docking (D/D) complex at… · the same entry in another collection · chain A against A, TM-score 1.00
- P00514 · AlphaFold monomer V2.0 prediction for camp-dependent protein kinase type I-alpha… · a predicted model of the same protein · chain B against A, TM-score 0.86
- Q9BSF0 · AlphaFold monomer V2.0 prediction for small membrane a-kinase anchor protein (Q9BSF0) · a predicted model of the same protein · chain C against A, TM-score 0.80
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00514
- Every structure of UniProt Q9BSF0
- Elsewhere: RCSB PDB 5HVZ · PDBe 5HVZ · UniProt P00514 · UniProt Q9BSF0
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