Research workbench
Structure of the second single stranded DNA binding protein (ssbb) from mycobacterium smegmatis
Analyse Structure of the second single stranded DNA binding protein (ssbb) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5GQO
- Type
- protein
- Length
- 195 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Single-stranded DNA-binding protein
- UniProt
- A0R1C4
- Ligands
- CA
Structure
x-ray diffraction · 2 distinct chains · 10% helix, 59% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Single-stranded DNA-binding protein | protein | 97 | 10% helix, 62% strand | A0R1C4 |
| B | Single-stranded DNA-binding protein | protein | 98 | 10% helix, 57% strand | A0R1C4 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 1313 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 5GQO · Structure of the second Single Stranded DNA Binding protein (SSBb) from Mycobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0R1C4
- Elsewhere: RCSB PDB 5GQO · PDBe 5GQO · UniProt A0R1C4
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