Research workbench
U1A-utrrna, NMR, 31 structures
Analyse U1A-utrrna, NMR, 31 structures in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1AUD
- Type
- protein + RNA
- Length
- 131 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA 3UTR; U1A 102
- UniProt
- P09012
- Pockets
- 2 · best druggability 0.57
Structure
solution nmr · 2 distinct chains · 31% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | RNA 3UTR | rna | 30 | — | — |
| A | U1A 102 | protein | 101 | 31% helix, 21% strand | P09012 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.57 | 0.90 | 16 | empty |
| 2 | 279 | 0.48 | 0.74 | 21 | empty |
Interfaces
1 interface between chains.
- B–A · 1037 Ų buried · 17 hydrogen bonds · protein-nucleic
Compared structures
- 1AUD · U1A-utrrna, NMR, 31 structures · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P09012
- Elsewhere: RCSB PDB 1AUD · PDBe 1AUD · UniProt P09012
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