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The tetra-modular cellulosomal arabinoxylanase CTXYL5A structure as revealed by X-ray crystallography

Analyse The tetra-modular cellulosomal arabinoxylanase CTXYL5A structure as revealed by… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5G56
Type: protein
Length: 707 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Carbohydrate binding family 6
UniProt: A3DHG6
Ligands: CA
Pockets: 4 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 17% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Carbohydrate binding family 6	protein	707	17% helix, 35% strand	A3DHG6

Ligands and binding sites

CA · Calcium ion · metal · 3 copies · chains A
MPD · (4S)-2-methyl-2,4-pentanediol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	594	0.69	0.78	65	empty
2	110	0.46	0.79	16	empty
3	97	0.46	0.80	20	empty
4	50	0.26	0.74	16	empty

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

5G56 · THE TETRA-MODULAR CELLULOSOMAL ARABINOXYLANASE CtXyl5A STRUCTURE AS REVEALED BY X-RAY… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A3DHG6
Elsewhere: RCSB PDB 5G56 · PDBe 5G56 · UniProt A3DHG6

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