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Sub-tomogram averaging of lassa virus glycoprotein spike from virus- like particles at pH 5

Analyse Sub-tomogram averaging of lassa virus glycoprotein spike from virus- like… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5FT2
Type: protein
Length: 157 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pre-glycoprotein polyprotein gp complex
UniProt: P08669
Ligands: NAG
Pockets: 1 · best druggability 0.30

Structure

electron microscopy · 1 distinct chain · 22% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Pre-glycoprotein polyprotein gp complex	protein	157	22% helix, 27% strand	P08669

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	68	0.30	0.74	16	empty

Modifications

Observed in the structure: 4 glycan, 3 disulfide (N-glycosylation, disulfide).

Compared structures

5FT2 · Sub-tomogram averaging of Lassa virus glycoprotein spike from virus- like particles at pH… · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P08669
Elsewhere: RCSB PDB 5FT2 · PDBe 5FT2 · UniProt P08669

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