Research workbench
Selective estrogen receptor downregulator antagonists: tetrahydroisoquinoline phenols 3.
Analyse Selective estrogen receptor downregulator antagonists: tetrahydroisoquinoline… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5FQS
- Type
- protein
- Length
- 233 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Estrogen receptor
- UniProt
- P03372
- Ligands
- J0W
- Pockets
- 3 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 69% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Estrogen receptor | protein | 233 | 69% helix, 4% strand | P03372 |
Ligands and binding sites
- J0W · (E)-3-[4-(6-hydroxy-2-isobutyl-1-methyl-3,4-dihydroisoquinolin-1-yl)phenyl]prop-2-enoic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 262 | 0.81 | 0.92 | 32 | J0W |
| 2 | 94 | 0.63 | 0.89 | 18 | empty |
| 3 | 51 | 0.28 | 0.75 | 15 | empty |
Compared structures
- 5FQS · Selective estrogen receptor downregulator antagonists: Tetrahydroisoquinoline phenols 3. · the same entry in another collection · chain A against A, TM-score 1.00
- P03372 · AlphaFold monomer V2.0 prediction for estrogen receptor (P03372) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03372
- Elsewhere: RCSB PDB 5FQS · PDBe 5FQS · UniProt P03372
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