Research workbench
1.45 ångström crystal structure of bifunctional 2',3'-cyclic nucleotide 2'-PHOSPHODIESTERASE/3'-nucleotidase periplasmic precursor protein from yersinia pestis with phosphate bound to the active site
Analyse 1.45 ångström crystal structure of bifunctional 2',3'-cyclic nucleotide… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5EQV
- Type
- protein
- Length
- 336 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bifunctional 2',3'-cyclic nucleotide 2'- PHOSPHODIESTERASE/3'-nucleotidase periplasmic…
- EC
- 3.1.4.16
- UniProt
- A0A0B6NVJ4
- Ligands
- MLT, FE, NA, PO4
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bifunctional 2',3'-cyclic nucleotide 2'- PHOSPHODIESTERASE/3'-nucleotidase periplasmic precursor protein (EC 3.1.4.16) | protein | 336 | 27% helix, 29% strand | A0A0B6NVJ4 |
Ligands and binding sites
- MLT · D-malate · ligand · chains A
- FE · Fe (III) ion · metal · 2 copies · chains A
- NA · Sodium ion · metal · 2 copies · chains A
- PO4 · Phosphate ion · ion · chains A
- PGE · Triethylene glycol · additive · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5EQV · 1.45 Angstrom Crystal Structure of Bifunctional 2',3'-cyclic Nucleotide… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0B6NVJ4
- Elsewhere: RCSB PDB 5EQV · PDBe 5EQV · UniProt A0A0B6NVJ4
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