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Crystal structure of BAZ2B bromodomain in complex with fragment F60

Analyse Crystal structure of BAZ2B bromodomain in complex with fragment F60 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5E9I
Type: protein
Length: 116 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Bromodomain adjacent to zinc finger domain protein 2B
UniProt: Q9UIF8
Ligands: F60
Pockets: 1 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 59% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Bromodomain adjacent to zinc finger domain protein 2B	protein	116	59% helix, 0% strand	Q9UIF8

Ligands and binding sites

F60 · 1H-indol-6-ol · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	94	0.50	0.82	20	F60

Compared structures

5E9I · Crystal Structure of BAZ2B bromodomain in complex with fragment F60 · the same entry in another collection · chain A against A, TM-score 1.00
Q9UIF8 · AlphaFold monomer V2.0 prediction for bromodomain adjacent to zinc finger domain protein… · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9UIF8
Elsewhere: RCSB PDB 5E9I · PDBe 5E9I · UniProt Q9UIF8

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