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Crystal structure of the luciferase

Analyse Crystal structure of the luciferase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5DV9
Type: protein
Length: 541 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Luciferin 4-monooxygenase
EC: 1.13.12.7
UniProt: P08659
Pockets: 7 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Luciferin 4-monooxygenase (EC 1.13.12.7)	protein	541	31% helix, 23% strand	P08659

Pockets

7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	719	0.76	0.81	98	empty
2	56	0.40	0.82	17	empty
3	65	0.40	0.80	13	empty
4	124	0.40	0.75	19	empty
5	62	0.36	0.78	12	empty

Compared structures

5DV9 · Crystal structure of the Luciferase · the same entry in another collection · chain A against A, TM-score 1.00
P08659 · AlphaFold monomer V2.0 prediction for luciferin 4-monooxygenase (P08659) · a predicted model of the same protein · chain A against A, TM-score 0.83

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P08659
Elsewhere: RCSB PDB 5DV9 · PDBe 5DV9 · UniProt P08659

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