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Structure of MIP6 RRM3 domain

Analyse Structure of MIP6 RRM3 domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5D77
Type: protein
Length: 82 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA-binding protein MIP6
UniProt: P38760
Ligands: NA, NO3

Structure

x-ray diffraction · 1 distinct chain · 23% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA-binding protein MIP6	protein	82	23% helix, 34% strand	P38760

Ligands and binding sites

NA · Sodium ion · metal · chains A
NO3 · Nitrate ion · ion · 2 copies · chains A
CIT · Citric acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 modified (oxidation).

Compared structures

5D77 · Structure of Mip6 RRM3 Domain · the same entry in another collection · chain A against A, TM-score 1.00
P38760 · AlphaFold monomer V2.0 prediction for RNA-binding protein MIP6 (P38760) · a predicted model of the same protein · chain A against A, TM-score 0.80

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P38760
Elsewhere: RCSB PDB 5D77 · PDBe 5D77 · UniProt P38760

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