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Crystal structure of mouse protocadherin-24 EC1-3

Analyse Crystal structure of mouse protocadherin-24 EC1-3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5CYX
Type: protein
Length: 318 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein CDHR2
UniProt: E9Q7P9
Ligands: CA, CL
Pockets: 1 · best druggability 0.38

Structure

x-ray diffraction · 1 distinct chain · 4% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein CDHR2	protein	318	4% helix, 45% strand	E9Q7P9

Ligands and binding sites

CA · Calcium ion · metal · 5 copies · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	98	0.38	0.75	19	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

5CYX · Crystal Structure of Mouse Protocadherin-24 EC1-3 · the same entry in another collection · chain A against A, TM-score 1.00
E9Q7P9 · AlphaFold monomer V2.0 prediction for cadherin-related family member 2 (E9Q7P9) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt E9Q7P9
Elsewhere: RCSB PDB 5CYX · PDBe 5CYX · UniProt E9Q7P9

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