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Signal recognition particle receptor srb-GDP from chaetomium thermophilum

Analyse Signal recognition particle receptor srb-GDP from chaetomium thermophilum in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5CK4
Type: protein
Length: 432 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative signal recognition particle protein
UniProt: G0S401
Ligands: GDP
Pockets: 1 · best druggability 0.55

Structure

x-ray diffraction · 2 distinct chains · 41% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative signal recognition particle protein	protein	214	41% helix, 19% strand	G0S401
B	Putative signal recognition particle protein	protein	218	40% helix, 20% strand	G0S401

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	317	0.55	0.76	30	empty

Interfaces

1 interface between chains.

A–B · 418 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

5CK4 · Signal recognition particle receptor SRb-GDP from Chaetomium thermophilum · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G0S401
Elsewhere: RCSB PDB 5CK4 · PDBe 5CK4 · UniProt G0S401

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