Research workbench
BT4246
Analyse BT4246 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5CK0
- Type
- protein
- Length
- 603 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Susd homolog
- UniProt
- Q89ZX5
- Ligands
- NI, K
- Pockets
- 5 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Susd homolog | protein | 603 | 40% helix, 10% strand | Q89ZX5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 288 | 0.70 | 0.84 | 31 | K |
| 2 | 311 | 0.62 | 0.79 | 28 | empty |
| 3 | 50 | 0.56 | 0.90 | 22 | empty |
| 4 | 81 | 0.41 | 0.78 | 16 | empty |
| 5 | 57 | 0.34 | 0.77 | 16 | empty |
Compared structures
- 5CK0 · BT4246 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q89ZX5
- Elsewhere: RCSB PDB 5CK0 · PDBe 5CK0 · UniProt Q89ZX5
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