Research workbench
Ribonucleotide reductase Y122 2,3,5-F3Y variant
Analyse Ribonucleotide reductase Y122 2,3,5-F3Y variant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5CI3
- Type
- protein
- Length
- 349 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribonucleoside-diphosphate reductase 1 subunit beta
- EC
- 1.17.4.1
- UniProt
- P69925
- Ligands
- FEO, SO4
- Pockets
- 1 · best druggability 0.27
Structure
x-ray diffraction · 1 distinct chain · 69% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribonucleoside-diphosphate reductase 1 subunit beta (EC 1.17.4.1) | protein | 349 | 69% helix, 4% strand | P69925 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.27 | 0.74 | 14 | empty |
Modifications
Observed in the structure: 1 modified (nonstandard).
Compared structures
- 5CI3 · Ribonucleotide reductase Y122 2,3,5-F3Y variant · the same entry in another collection · chain A against A, TM-score 1.00
- P69925 · AlphaFold monomer V2.0 prediction for ribonucleoside-diphosphate reductase 1 subunit beta… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P69925
- Elsewhere: RCSB PDB 5CI3 · PDBe 5CI3 · UniProt P69925
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