Research workbench
Joint X-RAY/NEUTRON structure of wild type mtan complexed with srh and adenine
Analyse Joint X-RAY/NEUTRON structure of wild type mtan complexed with srh and adenine in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5CCE
- Type
- protein
- Length
- 230 residues
- Chains
- 1
- Method
- neutron diffraction; x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-methylthioadenosine nucleosidase
- EC
- 3.2.2.30, 3.2.2.9
- UniProt
- Q9ZMY2
- Ligands
- 2WP, ADE
- Pockets
- 1 · best druggability 0.61
Structure
neutron diffraction; x-ray diffraction · 1 distinct chain · 39% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-methylthioadenosine nucleosidase (EC 3.2.2.30, 3.2.2.9) | protein | 230 | 39% helix, 29% strand | Q9ZMY2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.61 | 0.89 | 20 | 2WP, ADE |
Compared structures
- 5CCE · Joint X-ray/neutron structure of wild type MTAN complexed with SRH and adenine · the same entry in another collection · chain A against A, TM-score 1.00
- Q9ZMY2 · AlphaFold monomer V2.0 prediction for aminodeoxyfutalosine nucleosidase (Q9ZMY2) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9ZMY2
- Elsewhere: RCSB PDB 5CCE · PDBe 5CCE · UniProt Q9ZMY2
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