Research workbench
Fusion protein of MBP3-16 and B4 domain of protein a from staphylococcal aureus
Analyse Fusion protein of MBP3-16 and B4 domain of protein a from staphylococcal aureus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5CBO
- Type
- protein
- Length
- 2,112 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MBP3-16,IMMUNOGLOBULIN G-binding protein a
- UniProt
- P38507
- Pockets
- 20 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 61% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L | MBP3-16,IMMUNOGLOBULIN G-binding protein a | protein | 176 | 61% helix, 0% strand | P38507 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1118 | 0.84 | 0.85 | 72 | empty |
| 2 | 1029 | 0.84 | 0.85 | 73 | empty |
| 3 | 696 | 0.80 | 0.84 | 101 | empty |
| 4 | 620 | 0.80 | 0.85 | 85 | empty |
| 5 | 575 | 0.79 | 0.85 | 74 | empty |
Interfaces
30 interfaces between chains.
- A–C · 566 Ų buried · 6 hydrogen bonds · protein-protein
- B–D · 560 Ų buried · 6 hydrogen bonds · protein-protein
- E–G · 560 Ų buried · 6 hydrogen bonds · protein-protein
- J–L · 554 Ų buried · 5 hydrogen bonds · protein-protein
- F–H · 530 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- P38507 · AlphaFold monomer V2.0 prediction for immunoglobulin G-binding protein a (P38507) · a predicted model of the same protein · chain A against A, TM-score 0.36
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38507
- Elsewhere: RCSB PDB 5CBO · PDBe 5CBO · UniProt P38507
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