Research workbench
Structures of the candida albicans SEY1P GTPase in complex with GDPALF4-
Analyse Structures of the candida albicans SEY1P GTPase in complex with GDPALF4- in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5CA9
- Type
- protein
- Length
- 656 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein SEY1
- EC
- 3.6.5.5
- UniProt
- Q9C0L9
- Ligands
- ALF, GDP, MG
- Pockets
- 6 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein SEY1 (EC 3.6.5.5) | protein | 656 | 48% helix, 8% strand | Q9C0L9 |
Ligands and binding sites
- ALF · Tetrafluoroaluminate ion · ligand · chains A
- GDP · Guanosine-5'-diphosphate · ligand · chains A
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 178 | 0.73 | 0.89 | 38 | empty |
| 2 | 103 | 0.70 | 0.92 | 19 | empty |
| 3 | 152 | 0.57 | 0.82 | 24 | MG, ALF, GDP |
| 4 | 79 | 0.57 | 0.87 | 18 | empty |
| 5 | 93 | 0.38 | 0.75 | 17 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9C0L9
- Elsewhere: RCSB PDB 5CA9 · PDBe 5CA9 · UniProt Q9C0L9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.