Research workbench
Crystal structure of the C-terminal truncated neurospora crassa T7H (NCT7HDELTAC) in apo form
Analyse Crystal structure of the C-terminal truncated neurospora crassa T7H… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5C3O
- Type
- protein
- Length
- 260 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thymine dioxygenase
- UniProt
- Q7RYZ9
- Ligands
- CA
- Pockets
- 2 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thymine dioxygenase | protein | 260 | 32% helix, 24% strand | Q7RYZ9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 177 | 0.66 | 0.86 | 26 | CA |
| 2 | 97 | 0.35 | 0.74 | 17 | EDO |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 5C3O · Crystal structure of the C-terminal truncated Neurospora crassa T7H (NcT7HdeltaC) in apo… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7RYZ9
- Elsewhere: RCSB PDB 5C3O · PDBe 5C3O · UniProt Q7RYZ9
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