Research workbench
HK620 tail needle crystallized at pH 7.5 and derivatized with xenon
Analyse HK620 tail needle crystallized at pH 7.5 and derivatized with xenon in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5BU8
- Type
- protein
- Length
- 377 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA stabilization protein
- UniProt
- Q9AYZ3
- Ligands
- CA, XE
Structure
x-ray diffraction · 2 distinct chains · 59% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA stabilization protein | protein | 199 | 56% helix, 5% strand | Q9AYZ3 |
| B | DNA stabilization protein | protein | 178 | 62% helix, 5% strand | Q9AYZ3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 210 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 5BU8 · HK620 Tail Needle crystallized at pH 7.5 and derivatized with Xenon · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AYZ3
- Elsewhere: RCSB PDB 5BU8 · PDBe 5BU8 · UniProt Q9AYZ3
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