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X-ray structure of a core U2AF65/U2AF35 heterodimer

Analyse X-ray structure of a core U2AF65/U2AF35 heterodimer in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
1JMT
Type
protein
Length
121 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Splicing factor U2AF 35 kda subunit; Splicing factor U2AF 65 kda subunit
UniProt
Q01081, P26368

Structure

x-ray diffraction · 2 distinct chains · 39% helix, 26% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ASplicing factor U2AF 35 kda subunitprotein9842% helix, 31% strandQ01081
BSplicing factor U2AF 65 kda subunitprotein2326% helix, 4% strandP26368

Ligands and binding sites

  • HEZ · Hexane-1,6-diol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–B · 864 Ų buried · 14 hydrogen bonds · protein-protein

Compared structures

  • 1JMT · X-ray Structure of a Core U2AF65/U2AF35 Heterodimer · the same entry in another collection · chain A against A, TM-score 1.00
  • Q01081 · AlphaFold monomer V2.0 prediction for splicing factor U2AF 35 kda subunit (Q01081) · a predicted model of the same protein · chain A against A, TM-score 0.86
  • P26368 · AlphaFold monomer V2.0 prediction for splicing factor U2AF 65 kda subunit (P26368) · a predicted model of the same protein · chain B against A, TM-score 0.46

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