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Crystal structure of the LA12 fragment of APOER2
Analyse Crystal structure of the LA12 fragment of APOER2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5B4Y
- Type
- protein
- Length
- 79 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Low-density lipoprotein receptor-related protein 8
- UniProt
- Q14114
- Ligands
- CA
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Low-density lipoprotein receptor-related protein 8 | protein | 79 | 11% helix, 15% strand | Q14114 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 5B4Y · Crystal structure of the LA12 fragment of ApoER2 · the same entry in another collection · chain B against B, TM-score 1.00
- Q14114 · AlphaFold monomer V2.0 prediction for low-density lipoprotein receptor-related protein 8… · a predicted model of the same protein · chain B against A, TM-score 0.55
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q14114
- Elsewhere: RCSB PDB 5B4Y · PDBe 5B4Y · UniProt Q14114
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