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Crystal structure of the mutated 19 kda protein of oplophorus luciferase (nanokaz)

Analyse Crystal structure of the mutated 19 kda protein of oplophorus luciferase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5B0U
Type: protein
Length: 339 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Oplophorus-luciferin 2-monooxygenase catalytic subunit
UniProt: Q9GV45
Pockets: 2 · best druggability 0.68

Structure

x-ray diffraction · 2 distinct chains · 16% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Oplophorus-luciferin 2-monooxygenase catalytic subunit	protein	170	16% helix, 49% strand	Q9GV45
B	Oplophorus-luciferin 2-monooxygenase catalytic subunit	protein	169	16% helix, 50% strand	Q9GV45

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	190	0.68	0.86	32	empty
2	223	0.66	0.84	38	empty

Compared structures

5B0U · Crystal structure of the mutated 19 kDa protein of Oplophorus luciferase (nanoKAZ) · the same entry in another collection · chain A against A, TM-score 1.00
Q9GV45 · AlphaFold monomer V2.0 prediction for oplophorus-luciferin 2-monooxygenase catalytic… · a predicted model of the same protein · chain B against A, TM-score 0.90

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9GV45
Elsewhere: RCSB PDB 5B0U · PDBe 5B0U · UniProt Q9GV45

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