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Crystal structure of cypovirus polyhedra R13A mutant

Analyse Crystal structure of cypovirus polyhedra R13A mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5AXU
Type: protein
Length: 247 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Polyhedrin
UniProt: P11041
Ligands: ACE, ATP, CTP, MG
Pockets: 1 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 23% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Polyhedrin	protein	247	23% helix, 31% strand	P11041

Ligands and binding sites

ACE · Acetyl group · ligand · chains A
ATP · Adenosine-5'-triphosphate · ligand · chains A
CTP · Cytidine-5'-triphosphate · ligand · chains A
MG · Magnesium ion · metal
EDO · 1,2-ethanediol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	142	0.49	0.78	23	EDO

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

5AXU · Crystal Structure of Cypovirus Polyhedra R13A Mutant · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P11041
Elsewhere: RCSB PDB 5AXU · PDBe 5AXU · UniProt P11041

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