Research workbench
The 0.90 ångström structure (I222) of glucose isomerase crystallized in high-strength agarose hydrogel
Analyse The 0.90 ångström structure (I222) of glucose isomerase crystallized in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5AVH
- Type
- protein
- Length
- 386 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Xylose isomerase
- EC
- 5.3.1.5
- UniProt
- P24300
- Pockets
- 4 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xylose isomerase (EC 5.3.1.5) | protein | 386 | 49% helix, 11% strand | P24300 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 452 | 0.64 | 0.77 | 46 | empty |
| 2 | 65 | 0.43 | 0.81 | 13 | empty |
| 3 | 51 | 0.34 | 0.78 | 11 | empty |
| 4 | 77 | 0.30 | 0.72 | 19 | empty |
Compared structures
- 5AVH · The 0.90 angstrom structure (I222) of glucose isomerase crystallized in high-strength… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P24300
- Elsewhere: RCSB PDB 5AVH · PDBe 5AVH · UniProt P24300
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