Research workbench
Crystal structure of operophtera brumata CPV18 polyhedra
Analyse Crystal structure of operophtera brumata CPV18 polyhedra in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5A9P
- Type
- protein
- Length
- 248 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polyhedrin
- UniProt
- Q30C70
- Ligands
- ATP, GTP
- Pockets
- 4 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyhedrin | protein | 248 | 25% helix, 29% strand | Q30C70 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · chains A
- GTP · Guanosine-5'-triphosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 158 | 0.49 | 0.77 | 21 | empty |
| 2 | 88 | 0.36 | 0.76 | 18 | empty |
| 3 | 95 | 0.35 | 0.74 | 21 | empty |
| 4 | 69 | 0.32 | 0.75 | 18 | empty |
Compared structures
- 5A9P · Crystal structure of Operophtera brumata CPV18 polyhedra · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q30C70
- Elsewhere: RCSB PDB 5A9P · PDBe 5A9P · UniProt Q30C70
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