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Crystal structure of the arnb paralog VWA2 from sulfolobus acidocaldarius

Analyse Crystal structure of the arnb paralog VWA2 from sulfolobus acidocaldarius in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5A8J
Type: protein
Length: 365 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: VWA2
UniProt: Q4J9H5
Ligands: NA, CL, SO4
Pockets: 2 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	VWA2	protein	365	34% helix, 31% strand	Q4J9H5

Ligands and binding sites

NA · Sodium ion · metal · chains A
CL · Chloride ion · ion · 2 copies · chains A
SO4 · Sulfate ion · ion · chains A
GOL · Glycerol · additive · 4 copies · chains A
CIT · Citric acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	140	0.50	0.79	21	GOL
2	51	0.33	0.78	15	empty

Compared structures

5A8J · Crystal structure of the ArnB paralog VWA2 from Sulfolobus acidocaldarius · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q4J9H5
Elsewhere: RCSB PDB 5A8J · PDBe 5A8J · UniProt Q4J9H5

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