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Cellobionic acid phosphorylase - gluconic acid complex

Analyse Cellobionic acid phosphorylase - gluconic acid complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4ZLG
Type: protein
Length: 785 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative B-glycan phosphorylase
EC: 2.4.1.321
UniProt: Q21MB1
Ligands: GCO, LGC, SO4, CL
Pockets: 7 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative B-glycan phosphorylase (EC 2.4.1.321)	protein	785	31% helix, 26% strand	Q21MB1

Ligands and binding sites

GCO · D-gluconic acid · ligand · chains A
LGC · D-glucono-1,5-lactone · ligand · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A
CL · Chloride ion · ion · chains A
GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1070	0.78	0.80	75	GCO, GOL, LGC, SO4
2	172	0.47	0.76	23	empty
3	157	0.42	0.74	20	empty
4	54	0.34	0.79	18	empty
5	50	0.33	0.78	13	empty

Compared structures

4ZLG · Cellobionic acid phosphorylase - gluconic acid complex · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q21MB1
Elsewhere: RCSB PDB 4ZLG · PDBe 4ZLG · UniProt Q21MB1

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