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Crystal structure of a DUF4847 family protein (BVU_2626) from bacteroides vulgatus atcc 8482 at 1.00 a resolution

Analyse Crystal structure of a DUF4847 family protein (BVU_2626) from bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4ZGF
Type: protein
Length: 141 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: A6L3L5
Ligands: BEZ, CA
Pockets: 1 · best druggability 0.30

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	141	29% helix, 40% strand	A6L3L5

Ligands and binding sites

BEZ · Benzoic acid · ligand · chains A
CA · Calcium ion · metal · 3 copies · chains A
P6G · Hexaethylene glycol · additive · 4 copies · chains A
ACT · Acetate ion · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	57	0.30	0.75	16	empty

Modifications

Observed in the structure: 1 modified (engineered).

Compared structures

4ZGF · Crystal structure of a duf4847 family protein (BVU_2626) from Bacteroides vulgatus ATCC… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A6L3L5
Elsewhere: RCSB PDB 4ZGF · PDBe 4ZGF · UniProt A6L3L5

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