Research workbench
Structure of ubix in complex with oxidised prenylated FMN (radical)
Analyse Structure of ubix in complex with oxidised prenylated FMN (radical) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4ZAX
- Type
- protein
- Length
- 207 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubix
- EC
- 4.1.1.-
- UniProt
- Q9HX08
- Ligands
- 4LU, SCN, PO4
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ubix (EC 4.1.1.-) | protein | 207 | 42% helix, 14% strand | Q9HX08 |
Ligands and binding sites
- 4LU · 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-yl)-D-ribitol · ligand · chains A
- SCN · Thiocyanate ion · ion · 3 copies · chains A
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 4ZAX · Structure of UbiX in complex with oxidised prenylated FMN (radical) · the same entry in another collection · chain A against A, TM-score 1.00
- Q9HX08 · AlphaFold monomer V2.0 prediction for flavin prenyltransferase ubix (Q9HX08) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HX08
- Elsewhere: RCSB PDB 4ZAX · PDBe 4ZAX · UniProt Q9HX08
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