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Structure of ubix in complex with reduced prenylated FMN

Analyse Structure of ubix in complex with reduced prenylated FMN in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
4ZAW
Type
protein
Length
207 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Probable aromatic acid decarboxylase
EC
4.1.1.-
UniProt
Q9HX08
Ligands
4LU, PO4, SCN

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 14% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AProbable aromatic acid decarboxylase (EC 4.1.1.-)protein20742% helix, 14% strandQ9HX08

Ligands and binding sites

  • 4LU · 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-yl)-D-ribitol · ligand · chains A
  • PO4 · Phosphate ion · ion · 2 copies · chains A
  • SCN · Thiocyanate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 4ZAW · Structure of UbiX in complex with reduced prenylated FMN · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9HX08 · AlphaFold monomer V2.0 prediction for flavin prenyltransferase ubix (Q9HX08) · a predicted model of the same protein · chain A against A, TM-score 0.99

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