Research workbench

Resting state of rat cysteine dioxygenase C164S variant

Analyse Resting state of rat cysteine dioxygenase C164S variant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4YYO
Type: protein
Length: 187 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cysteine dioxygenase type 1
EC: 1.13.11.20
UniProt: P21816
Ligands: FE2, CL
Pockets: 1 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 17% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cysteine dioxygenase type 1 (EC 1.13.11.20)	protein	187	17% helix, 36% strand	P21816

Ligands and binding sites

FE2 · Fe (II) ion · metal · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	75	0.47	0.83	21	empty

Compared structures

4YYO · Resting state of rat cysteine dioxygenase C164S variant · the same entry in another collection · chain A against A, TM-score 1.00
P21816 · AlphaFold monomer V2.0 prediction for cysteine dioxygenase type 1 (P21816) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P21816
Elsewhere: RCSB PDB 4YYO · PDBe 4YYO · UniProt P21816

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