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Structure of aminoacid racemase in apo-form

Analyse Structure of aminoacid racemase in apo-form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4YSV
Type: protein
Length: 403 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative 4-aminobutyrate aminotransferase
UniProt: M1GRN3
Pockets: 3 · best druggability 0.43

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative 4-aminobutyrate aminotransferase	protein	403	41% helix, 19% strand	M1GRN3

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	113	0.43	0.77	19	empty
2	76	0.32	0.75	19	empty
3	69	0.31	0.74	17	empty

Compared structures

4YSV · Structure of aminoacid racemase in apo-form · the same entry in another collection · chain A against A, TM-score 1.00
M1GRN3 · AlphaFold monomer V2.0 prediction for isoleucine 2-epimerase (M1GRN3) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt M1GRN3
Elsewhere: RCSB PDB 4YSV · PDBe 4YSV · UniProt M1GRN3

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