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Crystal structures of mpges-1 inhibitor complexes

Analyse Crystal structures of mpges-1 inhibitor complexes in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
4YL1
Type
protein
Length
148 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Prostaglandin E synthase
EC
5.3.99.3
UniProt
O14684
Ligands
4U8, GSH

Structure

x-ray diffraction · 1 distinct chain · 80% helix, 1% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AProstaglandin E synthase (EC 5.3.99.3)protein14880% helix, 1% strandO14684

Ligands and binding sites

  • 4U8 · 5-(4-tert-butylphenyl)-1-[4-(propan-2-yloxy)phenyl]-1H-indole-2-carboxylic acid · ligand · chains A
  • GSH · Glutathione · ligand · chains A
  • BOG · octyl beta-D-glucopyranoside · additive · 2 copies · chains A
  • PEG · Di(hydroxyethyl)ether · additive · chains A
  • PG4 · Tetraethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 4YL1 · Crystal Structures of mPGES-1 Inhibitor Complexes · the same entry in another collection · chain A against A, TM-score 1.00
  • O14684 · AlphaFold monomer V2.0 prediction for prostaglandin E synthase (O14684) · a predicted model of the same protein · chain A against A, TM-score 0.98

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