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Tachylectin 5A from tachypleus tridentatus (japanese horseshoe crab)

Analyse Tachylectin 5A from tachypleus tridentatus (japanese horseshoe crab) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1JC9
Type: protein
Length: 220 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Techylectin-5A
UniProt: Q9U8W8
Ligands: NAG, CA
Pockets: 1 · best druggability 0.30

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Techylectin-5A	protein	220	20% helix, 30% strand	Q9U8W8

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	63	0.30	0.75	19	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

1JC9 · Tachylectin 5A from tachypleus tridentatus (japanese horseshoe crab) · the same entry in another collection · chain A against A, TM-score 1.00
Q9U8W8 · AlphaFold monomer V2.0 prediction for techylectin-5A (Q9U8W8) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9U8W8
Elsewhere: RCSB PDB 1JC9 · PDBe 1JC9 · UniProt Q9U8W8

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