Research workbench
Fusion of PYK2-fat domain with leupaxin LD1 motif, complexed with leupaxin LD4 peptide
Analyse Fusion of PYK2-fat domain with leupaxin LD1 motif, complexed with leupaxin LD4… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4XEV
- Type
- protein
- Length
- 332 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fusion protein of protein-tyrosine kinase 2-beta fat domain and leupaxin LD1 motif…
- EC
- 2.7.10.2
- UniProt
- Q14289
- Pockets
- 2 · best druggability 0.66
Structure
x-ray diffraction · 4 distinct chains · 82% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fusion protein of protein-tyrosine kinase 2-beta fat domain and leupaxin LD1 motif (EC 2.7.10.2) | protein | 148 | 81% helix, 1% strand | Q14289 |
| D | Fusion protein of protein-tyrosine kinase 2-beta fat domain and leupaxin LD1 motif (EC 2.7.10.2) | protein | 147 | 83% helix, 0% strand | Q14289 |
| C | 19-mer peptide containing leupaxin LD4 motif | protein | 19 | 74% helix, 0% strand | — |
| F | 19-mer peptide containing leupaxin LD4 motif | protein | 18 | 83% helix, 0% strand | — |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 453 | 0.66 | 0.78 | 44 | empty |
| 2 | 82 | 0.39 | 0.77 | 18 | empty |
Interfaces
4 interfaces between chains.
- A–C · 655 Ų buried · 5 hydrogen bonds · protein-protein
- D–F · 628 Ų buried · 3 hydrogen bonds · protein-protein
- A–D · 418 Ų buried · 2 hydrogen bonds · protein-protein
- D–C · 72 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 4XEV · Fusion of Pyk2-FAT domain with Leupaxin LD1 motif, complexed with Leupaxin LD4 peptide · the same entry in another collection · chain A against A, TM-score 1.00
- Q14289 · AlphaFold monomer V2.0 prediction for protein-tyrosine kinase 2-beta (Q14289) · a predicted model of the same protein · chain A against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q14289
- Elsewhere: RCSB PDB 4XEV · PDBe 4XEV · UniProt Q14289
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